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Ginseng rna-seq transcription factor

WebOct 31, 2024 · Transcriptome sequencing of ginseng hairy roots. The RNA quality results for the ginseng hairy roots are shown in Supplementary Table S1. The total mass of the six samples was greater than 2 μg, and the OD 260/280 was between 1.96 and 2.24. The Agilent Bioanalyzer 2100 was used to analyze the total RNA of the six ginseng hairy … WebMar 12, 2024 · Furthermore, we applied an integrative transcriptomic profiling approach based on machine learning to systematically map a global landscape of 277 transcription factor (TF) networks. Most of these TF networks are linked to biological processes, and some unannotated genes provide information about the corresponding mechanisms.

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WebDec 19, 2024 · To verify the gene expression levels produced by RNA-Seq, we performed qRT-PCR analysis on ten independent samples. We selected 10 DEGs in six compared … WebNov 25, 2015 · Background As a valuable medicinal plant, the yield of Panax ginseng is seriously affected by autotoxicity, which is a common phenomenon due to continuous cropping. However, the mechanism of autotoxicity in P. ginseng is still unknown. Results In total, high throughput sequencing of 18 RNA-Seq libraries produced 996,000 000 100 … evfree chico ca https://brazipino.com

Metabolome and transcriptome analysis reveals the …

WebAug 31, 2024 · Ginsenoside Rh2 (G-Rh2), a rare ginsenoside isolated from red ginseng, has considerable anti-cancer activity and induces apoptosis in a variety of cancer cells, but its activity in esophageal cancer cells is unclear. In this study, we examined the cytotoxic activity of (20S) G-Rh2 in highly differentiated esophageal squamous ECA109 cells and … WebNov 18, 2024 · Identification, classification and phylogenetic analysis of WRKY transcription factors in ginseng. A total of 137 WRKY (PgWRKY1 to PgWRKY137) … WebMay 22, 2024 · The set of 1634 unique HGNC-mappable human site-specific transcription factors that are used were previously defined by Lambert et al. . GTEx co-expression. … brown\\u0027s express tracking

Genome-wide characterization and analysis of WRKY transcription …

Category:Prediction of single-cell gene expression for transcription factor ...

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Ginseng rna-seq transcription factor

Transcriptional regulatory mechanism of a variant …

WebMay 13, 2024 · However, this disease’s effect on ginseng at the transcriptional and metabolic levels and the response mechanism of ginseng are still unclear. RNA-seq is a … WebMar 8, 2024 · samples of American ginseng, we found a transcription factor (named PqbZIP1) that was. ... Ampli fi cation and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR.

Ginseng rna-seq transcription factor

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WebNov 1, 2024 · In this notebook we showcase how to use decoupleR for transcription factor activity inference with a bulk RNA-seq data-set where the transcription factor FOXA2 was knocked out in pancreatic cancer cell lines. The data consists of 3 Wild Type (WT) samples and 3 Knock Outs (KO). They are freely available in GEO. WebA bZIP transcription factor, PqbZIP1, is involved in the plant defense response of American ginseng Shanshan Yang1,2, Xiaoxiao Zhang2,3, Ximei Zhang1, Yanmeng Bi1,4 and Weiwei Gao1 1 Institute of ...

WebMar 21, 2024 · RNA-seq libraries from Shizhu ginseng and Yuan ginseng were constructed. Approximately 52.5 million raw reads were obtained from each RNA-seq library. After filtering out low-quality reads, clean ... WebPanax ginseng C. A. Meyer is a medicinal herb, ... some transcription factors, such as WRKY, bHLH, ... (CF-CG) and farmland ginseng (F-CG). Six cDNA libraries were constructed, and RNA sequencing was conducted using these two samples as the sources of total RNA (Table 1). A total of 321,085,106 raw reads were generated, and …

WebMar 19, 2024 · From the SRA database, 65 paired end RNA-seq data sampled from P. ginseng root, stem and leaf tissues were collected. Reads from the collected data were … WebOct 5, 2024 · Table S2: Statistics of P. ginseng transcriptome sequencing. Table S3: Statistics of 17-mer analysis. Table S4: Predicting the repetitive elements. Table S5: Categories of TEs predicted in the ginseng genome. Table S6: Details of repetitive elements in ginseng genome. Table S7: The transcription factors. Table S8: The …

WebApr 12, 2024 · Here, we administered ginseng stem-leaf saponins (GSLS) to mice before parenteral immunization with an inactivated PEDV vaccine to investigate the effect of GSLS on the gut–mammary gland (MG)–secretory IgA axis. ... Ipswich, MA, USA) following the manufacturer’s instructions. RNA-seq experiments were performed on an Illumina HiSeq ...

WebNov 11, 2024 · Based on RNA sequencing (RNA-seq) and bioinformatics analysis, the global gene expression profiles of potato variety Helan 15 (Favorita) was investigated at four-time points during light exposure. ... The pathway of reactive oxygen species (ROS), as well as identified ROS-scavenging genes and transcription factors in the regulation of ... evf ramseyWebFeb 28, 2024 · Using in vitro DNA affinity purification sequencing (DAP-seq) of transcription factors involved in regulating PCWDE-encoding genes led to a more complete understanding of the direct targets of transcription factors that regulate PCWDE gene expression and of the cross talk between transcription factors involved in … brown\\u0027s eternal light funeral homeWebApr 12, 2024 · Among them, there were 20 unique transcription factors in the S2W stage, 82 unique in the S5W stage, 18 unique in the S8W stage, and 94 overlapping transcription factors . Combined with the TF network and the gene-terpenoid association analysis, the TFs co-expression network of C. blinii in NLT was established ( Figure 2 ). brown\u0027s eye